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accession-icon GSE12730
Mouse gestational protein restriction: Newborn offspring liver and hindleg muscle
  • organism-icon Mus musculus
  • sample-icon 24 Downloadable Samples
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Description

Gestational protein restriction is a model for low birth size. We hypothesized that taurine supplementation would protect against changes in newborn liver and muscle caused by a maternal low protein diet.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE64714
Expression data from RhoA-null and wildtype keratinocytes
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
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Description

Using mice with a keratinocyte-restricted deletion of the RhoA gene, we explored its role in the regulation of gene expression in vivo and in vitro

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon GSE26816
Comparative gene expression of mouse Pancreatic specific transcription factor 1a (Ptf1a/p48) in pancreatic progenitor cells
  • organism-icon Mus musculus
  • sample-icon 5 Downloadable Samples
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Description

Ptf1a was identified as the essential transcription factor which controls pancreatic exocrine enzyme expression. With lineage tracing eperiments Ptf1a was recognized as an important pancreatic progenitor transcription factor and Ptf1a null mice do not develop a pancreas.

Publication Title

RNA profiling and chromatin immunoprecipitation-sequencing reveal that PTF1a stabilizes pancreas progenitor identity via the control of MNX1/HLXB9 and a network of other transcription factors.

Sample Metadata Fields

Specimen part

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accession-icon GSE6686
Gene expression profiles in skeletal muscle after gene transfer by electroporation
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
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Description

Abstract

Publication Title

Gene expression profiles in skeletal muscle after gene electrotransfer.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE84767
Genetics of the hippocampal transcriptome in mouse: a systematic survey and online neurogenomics resource
  • organism-icon Mus musculus
  • sample-icon 67 Downloadable Samples
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Description

The Hippocampus Consortium data set provides estimates of mRNA expression in the adult hippocampus of 99 genetically diverse strains of mice including 67 BXD recombinant inbred strains, 13 CXB recombinant inbred strains, a diverse set of common inbred strains, and two reciprocal F1 hybrids.

Publication Title

Genetics of the hippocampal transcriptome in mouse: a systematic survey and online neurogenomics resource.

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE40540
IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Dynamic changes in 5-hydroxymethylation signatures underpin early and late events in drug exposed liver.

Sample Metadata Fields

Sex, Specimen part, Treatment, Time

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accession-icon GSE9444
Sleep deprivation and the brain
  • organism-icon Mus musculus
  • sample-icon 93 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Homer1a is a core brain molecular correlate of sleep loss.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE16387
Licensing of PPARg-regulated gene expression by IL-4-induced alternative macrophage activation
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 2 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

STAT6 transcription factor is a facilitator of the nuclear receptor PPARγ-regulated gene expression in macrophages and dendritic cells.

Sample Metadata Fields

Specimen part, Treatment, Subject, Time

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accession-icon GSE10026
High resolution gene expression profiling for simultaneous analysis of RNA synthesis, abundance and decay
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 36 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life.

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE10744
Copy number variation and gene expression in the mouse
  • organism-icon Mus musculus
  • sample-icon 108 Downloadable Samples
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Description

Copy number variation (CNV) of DNA segments has recently been identified as a major source of genetic diversity, but a more comprehensive understanding of the extent and phenotypic effect of this type of variation is only beginning to emerge. In this study we generated genome-wide expression data from 6 mouse tissues to investigate how CNVs influence gene expression.

Publication Title

Segmental copy number variation shapes tissue transcriptomes.

Sample Metadata Fields

No sample metadata fields

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...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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